Ibarra-Molero, B. : rechercher sur Z-Library

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1

Conservation of Protein Structure over Four Billion Years

Ingles-Prieto, Alvaro, Ibarra-Molero, Beatriz, Delgado-Delgado, Asuncion, Perez-Jimenez, Raul, Fernandez, Julio M., Gaucher, Eric A., Sanchez-Ruiz, Jose M., Gavira, Jose A.

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2013

2

[Methods in Enzymology] || Modern Analysis of Protein Folding by Differential Scanning Calorimetry

Ibarra-Molero, Beatriz

Année:

2015

Langue:

english

Fichier:

PDF, 1.59 MB

english, 2015

3

Lower kinetic limit to protein thermal stability: A proposal regarding protein stability in vivo and its relation with misfolding diseases

Isabel M. Plaza del Pino, Beatriz Ibarra-Molero, Jose M. Sanchez-Ruiz

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2000

Langue:

english

Fichier:

PDF, 183 KB

english, 2000

4

pH Corrections in Chemical Denaturant Solutions

Orlando Acevedo, Mercedes Guzman-Casado, Maria M. Garcia-Mira, Beatriz Ibarra-Molero, Jose M. Sanchez-Ruiz

Journal:

Analytical Biochemistry

Année:

2002

Langue:

english

Fichier:

PDF, 54 KB

english, 2002

5

The effect of charge-introduction mutations on E. coli thioredoxin stability

Raul Perez-Jimenez, Raquel Godoy-Ruiz, Beatriz Ibarra-Molero, Jose M. Sanchez-Ruiz

Journal:

Biophysical Chemistry

Année:

2005

Langue:

english

Fichier:

PDF, 125 KB

english, 2005

6

A simple tool to explore the distance distribution of correlated mutations in proteins

Raul Perez-Jimenez, Raquel Godoy-Ruiz, Antonio Parody-Morreale, Beatriz Ibarra-Molero, Jose M. Sanchez-Ruiz

Journal:

Biophysical Chemistry

Année:

2006

Langue:

english

Fichier:

PDF, 300 KB

english, 2006

7

Using multi-objective computational design to extend protein promiscuity

Maria Suarez, Pablo Tortosa, Maria M. Garcia-Mira, David Rodríguez-Larrea, Raquel Godoy-Ruiz, Beatriz Ibarra-Molero, Jose M. Sanchez-Ruiz, Alfonso Jaramillo

Journal:

Biophysical Chemistry

Année:

2010

Langue:

english

Fichier:

PDF, 720 KB

english, 2010

8

Beyond Lumry–Eyring: An unexpected pattern of operational reversibility/irreversibility in protein denaturation

David Rodriguez-Larrea, Beatriz Ibarra-Molero, Leonardo de Maria, Torben V. Borchert, Jose M. Sanchez-Ruiz

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 253 KB

english, 2008

9

How many ionizable groups can sit on a protein hydrophobic core?

Hector Garcia-Seisdedos, Beatriz Ibarra-Molero, Jose M. Sanchez-Ruiz

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2012

Langue:

english

Fichier:

PDF, 894 KB

english, 2012

10

The sarcosine effect on protein stability: A case of nonadditivity?

Beatriz Ibarra-Molero, Isabel M. Plaza Del Pino, Badredine Souhail, Hassan O. Hammou, Jose M. Sanchez-Ruiz

Journal:

Protein Science

Année:

2000

Langue:

english

Fichier:

PDF, 182 KB

english, 2000

11

A Stability Pattern of Protein Hydrophobic Mutations that Reflects Evolutionary Structural Optimization

Raquel Godoy-Ruiz, Raul Perez-Jimenez, Beatriz Ibarra-Molero, Jose M. Sanchez-Ruiz

Journal:

Biophysical Journal

Année:

2005

Langue:

english

Fichier:

PDF, 300 KB

english, 2005

12

Cold denaturation of ubiquitin

Beatriz Ibarra-Molero, George I. Makhatadze, Jose M. Sanchez-Ruiz

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Année:

1999

Langue:

english

Fichier:

PDF, 245 KB

english, 1999

13

Preformed secondary structure drives the association reaction of GCN4-p1, a model coiled-coil system

Jill A Zitzewitz, Beatriz Ibarra-Molero, Deanna R Fishel, Kimberly L Terry, C Robert Matthews

Journal:

Journal of Molecular Biology

Année:

2000

Langue:

english

Fichier:

PDF, 329 KB

english, 2000

14

Salt-bridges can Stabilize but do not Accelerate the Folding of the Homodimeric Coiled-coil Peptide GCN4-p1

Beatriz Ibarra-Molero, Jill A. Zitzewitz, C.Robert Matthews

Journal:

Journal of Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 426 KB

english, 2004

15

Relation Between Protein Stability, Evolution and Structure, as Probed by Carboxylic Acid Mutations

Raquel Godoy-Ruiz, Raul Perez-Jimenez, Beatriz Ibarra-Molero, Jose M. Sanchez-Ruiz

Journal:

Journal of Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 215 KB

english, 2004

16

Natural Selection for Kinetic Stability Is a Likely Origin of Correlations between Mutational Effects on Protein Energetics and Frequencies of Amino Acid Occurrences in Sequence Alignments

Raquel Godoy-Ruiz, Fernando Ariza, David Rodriguez-Larrea, Raul Perez-Jimenez, Beatriz Ibarra-Molero, Jose M. Sanchez-Ruiz

Journal:

Journal of Molecular Biology

Année:

2006

Langue:

english

Fichier:

PDF, 702 KB

english, 2006

17

The Efficiency of Different Salts to Screen Charge Interactions in Proteins: A Hofmeister Effect?

Perez-Jimenez, Raul, Godoy-Ruiz, Raquel, Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M.

Journal:

Biophysical Journal

Année:

2004

Langue:

english

Fichier:

PDF, 309 KB

english, 2004

18

Proteolytic Scanning Calorimetry: A Novel Methodology that Probes the Fundamental Features of Protein Kinetic Stability

Tur-Arlandis, Gema, Rodriguez-Larrea, David, Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M.

Journal:

Biophysical Journal

Année:

2010

Langue:

english

Fichier:

PDF, 153 KB

english, 2010

19

Energetic and Structural Consequences of Desolvation/Solvation Barriers to Protein Folding/Unfolding Assessed from Experimental Unfolding Rates

Rodriguez-Larrea, David, Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M.

Journal:

Biophysical Journal

Année:

2006

Langue:

english

Fichier:

PDF, 140 KB

english, 2006

20

Are There Equilibrium Intermediate States in the Urea-Induced Unfolding of Hen Egg-White Lysozyme? †

Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M.

Journal:

Année:

1997

Langue:

english

Fichier:

PDF, 184 KB

english, 1997

21

Genetic Algorithm to Design Stabilizing Surface-Charge Distributions in Proteins

Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M.

Journal:

Journal of Physical Chemistry B

Année:

2002

Langue:

english

Fichier:

PDF, 50 KB

english, 2002

22

Engineering a Thermostable Protein via Optimization of Charge−Charge Interactions on the Protein Surface †

Loladze, Vakhtang V., Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M., Makhatadze, George I.

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 52 KB

english, 1999

23

l -Phenylalanine Binding and Domain Organization in Human Phenylalanine Hydroxylase: A Differential Scanning Calorimetry Study †

Thórólfsson, Matthías, Ibarra-Molero, Beatriz, Fojan, Peter, Petersen, Steffen B., Sanchez-Ruiz, Jose M., Martínez, Aurora

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 440 KB

english, 2002

24

Electrostatic Interactions in Ubiquitin: Stabilization of Carboxylates by Lysine Amino Groups †

Sundd, Monica, Iverson, Nicole, Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M., Robertson, Andrew D.

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 275 KB

english, 2002

25

A Model-Independent, Nonlinear Extrapolation Procedure for the Characterization of Protein Folding Energetics from Solvent-Denaturation Data †,‡

Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M.

Journal:

Année:

1996

Langue:

english

Fichier:

PDF, 579 KB

english, 1996

26

Mapping the Energy Surface for the Folding Reaction of the Coiled-Coil Peptide GCN4-p1 †

Ibarra-Molero, Beatriz, Makhatadze, George I., Matthews, C. Robert

Journal:

Année:

2001

Langue:

english

Fichier:

PDF, 149 KB

english, 2001

27

Dissecting Structural and Electrostatic Interactions of Charged Groups in α-Sarcin. An NMR Study of Some Mutants Involving the Catalytic Residues †

García-Mayoral, M Flor, Pérez-Cañadillas, José Manuel, Santoro, Jorge, Ibarra-Molero, Beatriz, Sanchez-Ruiz, José Manuel, Lacadena, Javier, Martínez del Pozo, Álvaro, Gavilanes, José G., Rico, Manuel,

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 238 KB

english, 2003

28

Thermal versus Guanidine-Induced Unfolding of Ubiquitin. An Analysis in Terms of the Contributions from Charge−Charge Interactions to Protein Stability †

Ibarra-Molero, Beatriz, Loladze, Vakhtang V., Makhatadze, George I., Sanchez-Ruiz, Jose M.

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 135 KB

english, 1999

29

Identification of the Structural Basis of Thermal Lability of a Virus Provides a Rationale for Improved Vaccines

Rincón, Verónica, Rodríguez-Huete, Alicia, López-Argüello, Silvia, Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M., Harmsen, Michiel M., Mateu, Mauricio G.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.90 MB

english, 2014

30

Large-scale modulation of thermodynamic protein folding barriers linked to electrostatics

Halskau, O., Perez-Jimenez, R., Ibarra-Molero, B., Underhaug, J., Munoz, V., Martinez, A., Sanchez-Ruiz, J. M.

Journal:

Proceedings of the National Academy of Sciences

Année:

2008

Langue:

english

Fichier:

PDF, 568 KB

english, 2008

31

Mutational Studies on Resurrected Ancestral Proteins Reveal Conservation of Site-Specific Amino Acid Preferences throughout Evolutionary History

Risso, V. A., Manssour-Triedo, F., Delgado-Delgado, A., Arco, R., Barroso-delJesus, A., Ingles-Prieto, A., Godoy-Ruiz, R., Gavira, J. A., Gaucher, E. A., Ibarra-Molero, B., Sanchez-Ruiz, J. M.

Journal:

Molecular Biology and Evolution

Année:

2015

Langue:

english

Fichier:

PDF, 1.47 MB

english, 2015

32

Probing the Mutational Interplay between Primary and Promiscuous Protein Functions: A Computational-Experimental Approach

Garcia-Seisdedos, Hector, Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M., Elofsson, Arne

Journal:

PLoS Computational Biology

Année:

2012

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2012

33

Engineering ancestral protein hyperstability

Romero-Romero, M. L., Risso, V. A., Martinez-Rodriguez, S., Ibarra-Molero, B., Sanchez-Ruiz, J. M.

Journal:

Biochemical Journal

Année:

2016

Langue:

english

Fichier:

PDF, 582 KB

english, 2016

34

Using Resurrected Ancestral Proviral Proteins to Engineer Virus Resistance

Delgado, Asunción, Arco, Rocio, Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.73 MB

english, 2017

35

Fast folding and slow unfolding of a resurrected Precambrian protein

Candel, Adela M., Romero-Romero, M. Luisa, Gamiz-Arco, Gloria, Ibarra-Molero, Beatriz, Sanchez-Ruiz, Jose M.

Journal:

Proceedings of the National Academy of Sciences

Année:

2017

Langue:

english

Fichier:

PDF, 577 KB

english, 2017